Microcephaly, MCPH, Seckel syndrome, SCKL
Autosomal recessive, X-linked, autosomal dominant
Seckel syndrome is rare autosomal recessive disorder characterized by intrauterine growth retardation, dwarfism, microcephaly with mental retardation, and a characteristic 'bird-headed' facial appearance. The major feature of Seckel syndrome is associated autosomal recessive primary microcephaly (MCPH). Microcephaly is a neurodevelopmental condition characterized by microcephaly present at birth, decreased cerebral cortex size, and non-progressive mental retardation with the absence of visceral abnormalities.
Primary microcephaly has an incidence of less than 1 (0.68) 10,000 in Australia 1, 1:30,000 in Japan 2, 1:250,000 in Netherlands 2 and 1:2,000,000 in Scotland 2, 3.
Microcephaly is divided into primary microcephaly, which is present at birth, and secondary microcephaly, which develops postnatally 4. The crucial difference between these groupings is that primary microcephaly is usually a static developmental anomaly, whereas secondary microcephaly indicates a progressive neurodegenerative condition 5.
The major clinical features of microcephaly include the following:
- Prenatal onset, during the second trimester of gestation
- Reduced occipito-frontal circumference (OFC) at birth (<-2 SD) 3. Microcephaly tends to worsen over time and after 6 months of age OFC is at least -3 SD, while it ranges between -4 and -12 SD (mean -8 SD) in older individuals 3.
- Reduced volume of the cerebral hemispheres, commonly reduced to one third of normal, while the organization and topography of gyri are normal but the pattern may be simplified
- Reduced size of hindbrain and cerebellum
- A significant correlation between the severity of microcephaly and both the degree of simplified gyration and the reduction of white matter volume
- In cases with more severe microcephaly corpus callosum is thinner 6
- In some affected individuals neuronal migration is abnormal, resulting in heterotopias, or focal pachygyria or polymicrogyria 7.
Cognitive impairment is present in a majority of persons with microcephaly and it ranges from mild to moderate without major motor delay. More severe cognitive impairment has been observed in individuals with Seckel syndrome and in those with isolated microcephaly with brain malformations 3.
A common finding in microcephaly is also short stature, typically between -1 SD and -2 SD and in Seckel syndrome it ranges between -4 and -12 SD 3. Some affected individuals may develop craniosynostosis, secondary to insufficient and slow head growth.
There are many nongenetic and genetic causes of primary microcephaly, such as maternal alcohol overconsumption during pregnancy, congenital infection with toxoplasma, and Rubenstein Taybi syndrome. Microcephaly can be associated with hundreds of syndromal congenital anomalies, including many chromosomal disorders. Microcephaly is also a frequent sign of defects in DNA repair mechanisms and in nucleotide excision repair, in which it often is associated with general growth impairment.
There are a number of genes which have been associated with microcephaly, including the following genes (see Table):
- Microcephaly phenotype only: MCPH1 (MCPH1), WDR62 (MCPH2), CDK5RAP2 (MCPH3), KNL1 (MCPH4), ASPM (MCPH5), STIL (MCPH7), CEP135 (MCPH8), and CDK6 (MCPH12)
- Seckel syndrome phenotype only: ATR (SCKL1), NIN (SCKL7), and ATRIP
- Microcephaly with Seckel syndrome and/or intermediate phenotypes: RBBP8 (SCKL2), CEP152 (MCPH9/SCKL5), CENPJ (MCPH6/SCKL4), CEP63 (SCKL6), and PHC1 (MCPH11).
Table 1. Overview of genes associated with Microcephaly
|Gene||OMIM (Gene)||Associated diseases (OMIM)||Inheritance||CentoMD® exclusive variant numbers (++)|
|AKT3||611223||Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2||AD||3|
|AP4M1||602296||Spastic paraplegia 50, autosomal recessive||AR||13|
|ARFGEF2||605371||Periventricular heterotopia with microcephaly||AR||13|
|ASPM||605481||Microcephaly 5, primary, autosomal recessive||AR||21|
|ATR||601215||Seckel syndrome 1; ?Cutaneous telangiectasia and cancer syndrome, familial||AD, AR||17|
|ATRX||300032||Alpha-thalassemia myelodysplasia syndrome, somatic; Alpha-thalassemia/mental retardation syndrome; Mental retardation-hypotonic facies syndrome, X-linked||XL D, XL R||11|
|CASK||300172||FG syndrome 4; Mental retardation, with or without nystagmus; Mental retardation and microcephaly with pontine and cerebellar hypoplasia||XL D||17|
|CDK5RAP2||608201||Microcephaly 3, primary, autosomal recessive||AR||11|
|CDK6||603368||?Microcephaly 12, primary, autosomal recessive||AR||0|
|CENPE||117143||?Microcephaly 13, primary, autosomal recessive||AR||5|
|CENPJ||609279||Microcephaly 6, primary, autosomal recessive; ?Seckel syndrome 4||AR||17|
|CEP135||611423||Microcephaly 8, primary, autosomal recessive||AR||16|
|CEP152||613529||Seckel syndrome 5; Microcephaly 9, primary, autosomal recessive||AR||8|
|CEP63||614724||?Seckel syndrome 6||AR||22|
|CHMP1A||164010||Pontocerebellar hypoplasia, type 8||AR||5|
|CRIPT||604594||Short stature with microcephaly and distinctive facies||AR||0|
|DYRK1A||600855||Mental retardation, autosomal dominant 7||AD||10|
|EFTUD2||603892||Mandibulofacial dysostosis, Guion-Almeida type||AD||25|
|IER3IP1||609382||Microcephaly, epilepsy, and diabetes syndrome||AR||2|
|KATNB1||602703||Lissencephaly 6, with microcephaly||AR||1|
|KIF11||148760||Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation||AD||27|
|KNL1||609173||Microcephaly 4, primary, autosomal recessive||AR||7|
|MCPH1||607117||Microcephaly 1, primary, autosomal recessive||AR||22|
|MED17||603810||Microcephaly, postnatal progressive, with seizures and brain atrophy||AR||1|
|MFSD2A||614397||Microcephaly 15, primary, autosomal recessive||AR||1|
|MSMO1||607545||Microcephaly, congenital cataract, and psoriasiform dermatitis||AR||4|
|NDE1||609449||?Microhydranencephaly; Lissencephaly 4 (with microcephaly)||AR||2|
|NHEJ1||611290||Severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to ionizing radiation||9|
|NIN||608684||?Seckel syndrome 7||AR||4|
|ORC1||601902||Meier-Gorlin syndrome 1||AR||0|
|PCNT||605925||Microcephalic osteodysplastic primordial dwarfism, type II||AR||48|
|PHC1||602978||?Microcephaly 11, primary, autosomal recessive||AR||4|
|PLK4||605031||Microcephaly and chorioretinopathy, autosomal recessive, 2||AR||1|
|PNKP||605610||Microcephaly, seizures, and developmental delay; Ataxia-oculomotor apraxia 4||AR||28|
|PYCR2||616406||Leukodystrophy, hypomyelinating, 10||AR||1|
|QARS||603727||Microcephaly, progressive, seizures, and cerebral and cerebellar atrophy||AR||2|
|RBBP8||604124||Jawad syndrome; Seckel syndrome 2||AR||7|
|SASS6||609321||?Microcephaly 14, primary, autosomal recessive||AR||0|
|SLC25A19||606521||Microcephaly, Amish type; Thiamine metabolism dysfunction syndrome 4 (progressive polyneuropathy type)||AR||6|
|STAMBP||606247||Microcephaly-capillary malformation syndrome||AR||1|
|STIL||181590||Microcephaly 7, primary, autosomal recessive||AR||10|
|TRMT10A||616013||Microcephaly, short stature, and impaired glucose metabolism 1||AR||0|
|TUBB2B||612850||Cortical dysplasia, complex, with other brain malformations 7||AD||4|
|TUBGCP4||609610||Microcephaly and chorioretinopathy, autosomal recessive, 3||AR||0|
|TUBGCP6||610053||Microcephaly and chorioretinopathy, autosomal recessive, 1||AR||37|
|WDR62||613583||Microcephaly 2, primary, autosomal recessive, with or without cortical malformations||AR||22|
|ZNF335||610827||?Microcephaly 10, primary, autosomal recessive||AR||2|
Abbreviations: MPPH-Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome; SPG-Spastic paraplegia; ARPHM-Autosomal recessive periventricular heterotopia with microcephaly; BRPS-Bainbridge-Ropers syndrome; SCKL-Seckel syndrome; FCTCS-Familial cutaneous telangiectasia and cancer syndrome; MRXHF-Mental retardation-hypotonic facies syndrome; ATRX-Alpha-thalassemia/mental retardation syndrome ATMDS-Alpha-thalassemia myelodysplasia syndrome, somatic; MICPCH-Mental retardation and microcephaly with pontine and cerebellar hypoplasia; FGS-FG syndrome; PCH-Pontocerebellar hypoplasia; MRD-Mental retardation autosomal dominant; MFDGA-Mandibulofacial dysostosis Guion-Almeida type; MEDS-Microcephaly, epilepsy, and diabetes syndrome; LIS-Lissencephaly; MCCPD-Microcephaly, congenital cataract, and psoriasiform dermatitis; MHAC-Microhydranencephaly; SCID-Severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to ionizing radiation; MCCRP-Microcephaly and chorioretinopathy; MCSZ-Microcephaly, seizures, and developmental delay; AOA-Ataxia-oculomotor apraxia; HLD-Hypomyelinating leukodystrophy; JWDS-Jawad syndrome; THMD-Thiamine metabolism dysfunction syndrome; MICCAP-Microcephaly-capillary malformation syndrome; MSSGM-Microcephaly, short stature, and impaired glucose metabolism; PMGYSA-Polymicrogyria, symmetric or asymmetric; MOWS-Mowat-Wilson syndrome.
Treatment for patients affected with microcephaly commonly includes supportive therapy, including special education, speech and language therapy, behavioral therapy, occupational therapy, and community services for families. Ritalin® may be helpful in managing hyperkinesia 3. Seizures are usually responsive to monotherapy with standard antiepileptic drugs (AEDs).
CENTOGENE offers full gene sequencing and deletion/duplication analysis for the Microcephaly panel (genes: AKT3, AP4M1, ARFGEF2, ASPM, ASXL3, ATR, ATRX, CASC5, CASK, CDK5RAP2, CDK6, CENPE, CENPF, CENPJ, CEP135, CEP152, CEP63, CHMP1A, CRIPT, DYRK1A, EFTUD2, IER3IP1, KATNB1, KIF11, MCPH1, MED17, MFSD2A, MSMO1, NDE1, NHEJ1, NIN, ORC1, PCNT, PHC1, PLK4, PNKP, PYCR2, QARS, RBBP8, SASS6, SLC25A19, STAMBP, STIL, TRMT10A, TUBB2B, TUBGCP4, TUBGCP6, WDR62, ZEB2, ZNF335).
The differential diagnosis of microcephaly-related disorders – depending on the major symptoms in the initial case – includes the following diseases:
- Down Syndrome
- Fetal Alcohol Syndrome
- Pediatric Craniosynostosis
- Rett Syndrome
- Spina Bifida
CENTOGENE offers an advanced, fast and cost-effective strategy to test large NGS panels and diagnose complex phenotypes based on PCR-free whole genome sequencing and NGS technology. This approach offers an unparalleled advantage by reducing amplification/capture biases and providing sequencing of the entire gene with more uniform coverage.
To confirm/establish the diagnosis, CENTOGENE offers the following testing strategy for microcephaly using NGS Panel Genomic targeted towards this specific phenotype:
Step 1: Whole genome sequencing from a single filter card. The sequencing covers the entire genic region (coding region, exon/intron boundaries, intronic and promoter) for all the genes included in the microcephaly panel. Copy Number Variants analysis derived from NGS data is also included.
Step 2: If no mutation is identified after analysis of the microcephaly panel, we recommend continuing the bioinformatics analysis of the data obtained through whole genome sequencing to cover those genes which are either implicated in an overlapping phenotype or could be involved in a similar pathway but are not strongly clinically implicated based on the current information in literature.
The following individuals are candidates for microcephaly testing:
- Individuals with a family history of microcephaly and presentation of the most common symptoms
- Individuals without a positive family history, but with symptoms resembling microcephaly
- Individuals with a negative but suspected family history of microcephaly, in order to perform proper genetic counseling.
Sequencing, deletion/duplication of the panel genes should be performed in all individuals suspected of having microcephaly and suspected phenotypes. In parallel, other genes reported to be related with this clinical phenotype should also be analyzed for the presence of mutations, due to the overlap in many clinical features caused by those particular genes.
Confirmation of a clinical diagnosis through genetic testing can allow for genetic counseling and may direct medical management. Genetic counseling can provide a patient and/or family with the natural history of the microcephaly and related disorders identify at-risk family members, provide disease risks as well as appropriate referral for patient support and/or resources.
More information on CENTOGENE´s Microcephaly panel can be found in our genetic test catalogue.